Though the organization has achieve quite much locally, nationally and internationally, much still has to be done at the grass root level considering the insufficient capacity and ability to identify the salient issues or important facts of any problem and present them in a manner and language that would make immediate meaning to a third party.

The major challenges of MBOSCUDA considering it national character include amongst others, the settlement patterns and resistance to change by the Mbororo Fulani who are the principal target of the organization, insufficient resources (Human, material and financial) and persistent victimization of it members and staff by some powerful individuals.

Another key challenge of the organization is the un conducive socio-political and economic environment in which MBOSCUDA operates like the endemic farmer-grazier conflicts, lack political representation of Mbororo people in decision making fura etc.